Examples

• Integrate scATAC and scRNA
  • PBMC data integration
    • Data preprocessing
    • Integration with specific genes and optimal transport loss
    • Evaluate the results with various scores
    • Project data after training
  • Mouse spleen integration
• Integrate MERFISH and scRNA
  • MERFISH and scRNA data preprocess
  • MERFISH and scRNA data integration
  • Predict scRNA-seq through MERFISH
  • Impute genes for MERFISH
• Deconvolute pancreatic ductal adenocarcinoma (PDAC)
  • Integrate PDAC with scRNA
  • Spatial deconvolution of PDAC with OT plan
• Deconvolute HER2-positive breast cancer (BRCA)
  • Integrate BRCA with scRNA
  • Spatial deconvolution of BRCA with OT plan
• Vertical integration for paired datasets
• Diagonal integration with contrastive learning